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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_51321853_51321933_F

Intron Information:

Intron Rank:
139637
Intron Class:
major
Intron Phase:
Intron Coordinates:
51321853 - 51321933
Intron Length:
81

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTGGCGTG
5'SS Class:
major
3'SS Sequence:
CCTTGCATGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
CCTTGCATGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.9
0.4
1.3
59.2
45.8
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
66.7
0.38
1
61.2
39
Minor 5ss
34.9
-1.7
3.5
46.7
48.8
Minor BPS
48.8
-0.1
2.1
62.99
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025059
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018780
51321212 - 51322530
1319