Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_51425410_51440944_R

Intron Information:

Intron Rank:

146797

Intron Class:

major

Intron Phase:

Intron Coordinates:

51425410 - 51440944

Intron Length:

15535

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATTTTG

5'SS Class:

strong_major

3'SS Sequence:

CTTTTTGTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTGAAT

U12 Branch Point Sequence:

GAGTCCTTCACC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.4

0.86

0.9

80.7

34.7

Major BPS

74.6

0.61

1.4

34.5

Major PPT

87.6

0.85

0.8

80.3

37.3

Minor 5ss

43.9

-0.7

2.8

58.4

46.2

Minor BPS

63.3

0.4

1.8

68.41

42.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026298

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046046

51424454 - 51441222

16769