Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_51425410_51473263_R

Intron Information:

Intron Rank:

146793

Intron Class:

major

Intron Phase:

Intron Coordinates:

51425410 - 51473263

Intron Length:

47854

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTGGTACC

5'SS Class:

major

3'SS Sequence:

CTTTTTGTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTGAAT

U12 Branch Point Sequence:

GAGTCCTTCACC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.4

0.57

1.2

70.9

39.4

Major BPS

74.6

0.61

1.4

34.5

Major PPT

87.6

0.85

0.8

80.3

37.3

Minor 5ss

-2.1

2.7

38.2

39.5

Minor BPS

63.3

0.4

1.8

68.41

42.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026298

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039470

51425397 - 51473315

47919