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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_51543495_51544715_R

Intron Information:

Intron Rank:
145091
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
51543495 - 51544715
Intron Length:
1221

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
CAAACCCTAACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TGTTCTTTATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
20.5
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
58.7
0.2
1
51.2
37.4
Minor 5ss
34.4
-1.8
3.3
48.7
47.5
Minor BPS
67.2
0.52
1.5
74.74
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025478
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030953
51543085 - 51548955
5871
ENSAPLT00000046449
51543085 - 51546789
3705