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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_51552455_51553805_F

Intron Information:

Intron Rank:
129850
Intron Class:
major
Intron Phase:
Intron Coordinates:
51552455 - 51553805
Intron Length:
1351

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCACTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
GTGCCTCTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
80.5
33.9
Major BPS
85
0.87
0.8
85.6
23
Major PPT
84.9
0.79
0.7
82.5
27.7
Minor 5ss
31.4
-2.1
2.9
42.1
44.5
Minor BPS
56.2
0.19
1.7
66.46
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019891
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028484
51551511 - 51555192
3682
ENSAPLT00000020317
51551511 - 51555192
3682