About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_51588175_51591258_R

Intron Information:

Intron Rank:
139047
Intron Class:
major
Intron Phase:
Intron Coordinates:
51588175 - 51591258
Intron Length:
3084

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTAAG
5'SS Class:
strong_major
3'SS Sequence:
ATCTTGTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TCGCATTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
74
38.4
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
74.9
0.56
0.9
68.6
36.7
Minor 5ss
28.2
-2.5
2.8
32
42.7
Minor BPS
58.1
0.33
1.5
69.85
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022303
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017490
51588168 - 51593626
5459