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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_51591363_51593499_R

Intron Information:

Intron Rank:
139048
Intron Class:
major
Intron Phase:
Intron Coordinates:
51591363 - 51593499
Intron Length:
2137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGAAAG
5'SS Class:
major
3'SS Sequence:
TTTCTCATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTTCTCATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
0.9
69.5
36.5
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
87.9
0.85
0.7
85.8
27
Minor 5ss
27.5
-2.6
2.7
28.4
37.2
Minor BPS
62.3
0.47
1.8
83.64
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022303
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017490
51588168 - 51593626
5459