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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_51599659_51604019_R

Intron Information:

Intron Rank:
142971
Intron Class:
major
Intron Phase:
Intron Coordinates:
51599659 - 51604019
Intron Length:
4361

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGCTCT
5'SS Class:
major
3'SS Sequence:
TTCTTGTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAAAAAT
U12 Branch Point Sequence:
TTCTTGTTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
68.4
39.3
Major BPS
54
0.1
1
59.7
32.6
Major PPT
78.6
0.64
1
75.5
38.4
Minor 5ss
40.6
-1
3
48.7
47
Minor BPS
58.4
0.26
2.1
73.41
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024282
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024770
51599532 - 51604518
4987