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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_51604175_51624615_R

Intron Information:

Intron Rank:
142970
Intron Class:
major
Intron Phase:
Intron Coordinates:
51604175 - 51624615
Intron Length:
20441

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTGTCTTTCACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
80
29.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
76.9
0.61
0.9
70.7
39.9
Minor 5ss
26.1
-2.7
2.9
29.9
43.2
Minor BPS
68.6
0.57
1.7
77.71
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024282
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023484
51604023 - 51624682
20660