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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_51614513_51624615_R

Intron Information:

Intron Rank:
142975
Intron Class:
major
Intron Phase:
Intron Coordinates:
51614513 - 51624615
Intron Length:
10103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
GCCCTCTTCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAA
U12 Branch Point Sequence:
AGACGCTTACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
80
29.3
Major BPS
71.2
0.53
1
72.3
32.8
Major PPT
74.8
0.56
0.8
71.9
32.6
Minor 5ss
26.1
-2.7
2.9
29.9
43.2
Minor BPS
44.3
-0.3
2
59.14
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024282
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038084
51614454 - 51638207
23754