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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_51624768_51637267_R

Intron Information:

Intron Rank:
142973
Intron Class:
major
Intron Phase:
Intron Coordinates:
51624768 - 51637267
Intron Length:
12500

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGGAA
5'SS Class:
strong_major
3'SS Sequence:
GCTTCTTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAG
U12 Branch Point Sequence:
TGTCTTTTAAGA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
71.7
33.5
Major BPS
75.6
0.64
1.5
84
34.5
Major PPT
77.9
0.63
0.8
72
32.6
Minor 5ss
27.9
-2.5
3.5
37.1
47.5
Minor BPS
59.5
0.3
1.6
68.82
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024282
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024932
51623146 - 51638207
15062
ENSAPLT00000043236
51624527 - 51638207
13681
ENSAPLT00000039486
51615885 - 51638207
22323
ENSAPLT00000038084
51614454 - 51638207
23754