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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_51637432_51638197_R

Intron Information:

Intron Rank:
142974
Intron Class:
major
Intron Phase:
Intron Coordinates:
51637432 - 51638197
Intron Length:
766

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTTAGTTGA
5'SS Class:
major
3'SS Sequence:
TTTGATCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTCTTTTTGATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.2
68.9
38.4
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
82.8
0.74
0.9
73.8
41.4
Minor 5ss
36.1
-1.6
2.6
39
40.5
Minor BPS
67.2
0.52
1.1
72.08
33.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024282
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039486
51615885 - 51638207
22323
ENSAPLT00000038084
51614454 - 51638207
23754
ENSAPLT00000024932
51623146 - 51638207
15062