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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_51823079_51830351_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
51823079 - 51830351
Intron Length:
7273

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGAAT
5'SS Class:
strong_major
3'SS Sequence:
ACACTCCTGGTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTGCGAC
U12 Branch Point Sequence:
CCTTGCGACACT
Flanking Amino Acid:
HRSAQDLRKQVSKVNGVTRM
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
80.6
33.5
Major BPS
49.5
-0
1.4
49.9
45.3
Major PPT
59.3
0.21
1
54.9
35.6
Minor 5ss
34
-1.8
3.2
48.4
47.4
Minor BPS
37.5
-0.9
2.8
58.33
50.6

Associated Gene:

Gene:
JARID2
Ensembl Gene ID:
ENSAPLG00000004296
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004438
51769955 - 51856174
86220