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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_51831370_51835496_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
51831370 - 51835496
Intron Length:
4127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
ACGTGGACCCCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CGTGGAC
U12 Branch Point Sequence:
CGCACGTGGACC
Flanking Amino Acid:
GITMDELPLIGGCELDLACF
Intron Amino Acid Position:
594

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.6
32.5
Major BPS
43.7
-0.4
1.4
38.2
41.7
Major PPT
55.4
0.12
1
43.8
41.7
Minor 5ss
31.9
-2.1
3.6
47.6
48
Minor BPS
41.9
-0.6
2.2
47.77
42

Associated Gene:

Gene:
JARID2
Ensembl Gene ID:
ENSAPLG00000004296
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004438
51769955 - 51856174
86220