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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_51835997_51840298_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51835997 - 51840298
Intron Length:
4302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACGAGG
5'SS Class:
major
3'SS Sequence:
TCTTCTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTATAT
Flanking Amino Acid:
LSDLHKCIYKGRSVSLTTFY
Intron Amino Acid Position:
761

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.2
64.3
47.1
Major BPS
100
1.24
0.5
100
0
Major PPT
84.4
0.77
0.7
79.7
25.8
Minor 5ss
37.2
-1.4
3.1
48.8
47
Minor BPS
62.9
0.48
2
86.88
38.3

Associated Gene:

Gene:
JARID2
Ensembl Gene ID:
ENSAPLG00000004296
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004438
51769955 - 51856174
86220