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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_51840950_51841095_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
51840950 - 51841095
Intron Length:
146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTCG
5'SS Class:
strong_major
3'SS Sequence:
GCCCCCTGAACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTGACAT
U12 Branch Point Sequence:
GCCCCCTGAACA
Flanking Amino Acid:
FPVGKSEPFSRHGWNLTVLP
Intron Amino Acid Position:
831

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.1
38.8
Major BPS
55.3
0.13
1.3
64.4
41.8
Major PPT
58.7
0.2
1
53.2
35.4
Minor 5ss
37
-1.5
3.2
47.6
48
Minor BPS
59
0.28
1.5
62.68
43.1

Associated Gene:

Gene:
JARID2
Ensembl Gene ID:
ENSAPLG00000004296
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004438
51769955 - 51856174
86220