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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_51842119_51844393_F

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
51842119 - 51844393
Intron Length:
2275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
GACAAAACAACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAGTAAA
U12 Branch Point Sequence:
TTTCCTCTGACA
Flanking Amino Acid:
DYLHTGADCIWYCIPAAEEN
Intron Amino Acid Position:
893

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
92.6
23.1
Major BPS
67.4
0.43
1.1
67.9
36.3
Major PPT
48.8
-0
1
37.6
38
Minor 5ss
41.8
-0.9
2.9
57.3
41.2
Minor BPS
62.2
0.38
1.6
76.92
33.2

Associated Gene:

Gene:
JARID2
Ensembl Gene ID:
ENSAPLG00000004296
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004438
51769955 - 51856174
86220