Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_51844500_51845361_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

51844500 - 51845361

Intron Length:

862

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAGGTTAA

5'SS Class:

major

3'SS Sequence:

TATGTCTTTCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TATTTCTTTATT

Flanking Amino Acid:

GLEMLESNVMISPEILCKEG

Intron Amino Acid Position:

929

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.3

0.69

72.9

34.4

Major BPS

96.5

1.15

0.6

34.2

Major PPT

78.3

0.64

0.9

70.2

Minor 5ss

38.3

-1.3

3.1

45.3

45.2

Minor BPS

69.8

0.71

1.5

84.43

36.6

Associated Gene:

Gene:

JARID2

Ensembl Gene ID:

ENSAPLG00000004296

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004438

51769955 - 51856174

86220