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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_51852578_51854106_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51852578 - 51854106
Intron Length:
1529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTCAA
5'SS Class:
major
3'SS Sequence:
CCTCTTTTGATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCATAT
U12 Branch Point Sequence:
CCTCTTTTGATA
Flanking Amino Acid:
ICQHLCYLSMVVQENENVVF
Intron Amino Acid Position:
1095

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
66.8
40.3
Major BPS
59
0.23
1.2
55
42.7
Major PPT
73.8
0.54
0.9
71.5
33
Minor 5ss
32.3
-2
3.1
37
42.7
Minor BPS
53.8
0.11
1.2
58.03
36.2

Associated Gene:

Gene:
JARID2
Ensembl Gene ID:
ENSAPLG00000004296
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004438
51769955 - 51856174
86220