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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_51858025_51858977_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51858025 - 51858977
Intron Length:
953

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTTAGTGAT
5'SS Class:
major
3'SS Sequence:
TTTTTTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTCAT
U12 Branch Point Sequence:
TAGTCATCATCT
Flanking Amino Acid:
AVTERKGASDSFSL*
Intron Amino Acid Position:
342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.2
75.5
33.8
Major BPS
77
0.67
1.1
77.7
37.1
Major PPT
96
1.03
0.5
92.7
17.1
Minor 5ss
33.1
-1.9
3.2
46.6
41.9
Minor BPS
48.7
-0
2.1
71.04
45.2

Associated Gene:

Gene:
DTNBP1
Ensembl Gene ID:
ENSAPLG00000013450
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014053
51857878 - 51927163
69286