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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_51864648_51898280_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
51864648 - 51898280
Intron Length:
33633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTATGCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
TKRKELETFKAELDAEHAQK
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.3
1.07
0.7
84.4
33.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
75.3
0.57
1
73.7
40.8
Minor 5ss
36.9
-1.5
3
51.2
45.2
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
DTNBP1
Ensembl Gene ID:
ENSAPLG00000013450
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038453
51858284 - 51927163
68880
ENSAPLT00000023984
51858284 - 51927163
68880
ENSAPLT00000014053
51857878 - 51927163
69286