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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_51898304_51911107_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51898304 - 51911107
Intron Length:
12804

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCCAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTCTCCAACA
Flanking Amino Acid:
LQLENYKKTKRKELETFKAE
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
85.6
24.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
81.9
0.72
0.8
78.3
29.1
Minor 5ss
34.4
-1.8
2.8
41.8
44.8
Minor BPS
63
0.4
1.9
80.53
35

Associated Gene:

Gene:
DTNBP1
Ensembl Gene ID:
ENSAPLG00000013450
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038453
51858284 - 51927163
68880
ENSAPLT00000023984
51858284 - 51927163
68880
ENSAPLT00000014053
51857878 - 51927163
69286