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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_51911241_51916975_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
51911241 - 51916975
Intron Length:
5735

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
ATGTTTCTTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TGTTTCTTATAG
Flanking Amino Acid:
ADLECLTASLARLEASFEEM
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.8
88.6
27.1
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
79
0.65
0.8
73.7
36.4
Minor 5ss
42.7
-0.8
3.4
64.1
47.4
Minor BPS
57.6
0.1
1.8
65.12
42.5

Associated Gene:

Gene:
DTNBP1
Ensembl Gene ID:
ENSAPLG00000013450
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038453
51858284 - 51927163
68880
ENSAPLT00000023984
51858284 - 51927163
68880
ENSAPLT00000014053
51857878 - 51927163
69286