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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_51917109_51920529_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51917109 - 51920529
Intron Length:
3421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTGTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TTGCAAGTAAAG
Flanking Amino Acid:
GAKDCAKAGELVDSEVVMLS
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
78.6
0.71
1
78.6
31
Major PPT
82.4
0.73
0.9
80.3
37.3
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
39.4
-0.9
2.3
48.6
44.1

Associated Gene:

Gene:
DTNBP1
Ensembl Gene ID:
ENSAPLG00000013450
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038453
51858284 - 51927163
68880
ENSAPLT00000023984
51858284 - 51927163
68880
ENSAPLT00000014053
51857878 - 51927163
69286