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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_51920591_51921485_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51920591 - 51921485
Intron Length:
895

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGACAT
5'SS Class:
strong_major
3'SS Sequence:
ATCTTCTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATCAT
U12 Branch Point Sequence:
AATCATTTATCT
Flanking Amino Acid:
EFSPGLELLSRYEDAWAALH
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
73.4
37.3
Major BPS
71.6
0.54
1
72
33.1
Major PPT
84.1
0.77
0.7
81.6
29.7
Minor 5ss
39.7
-1.2
3.1
56
48.1
Minor BPS
51.3
0.12
1.8
70.35
40.1

Associated Gene:

Gene:
DTNBP1
Ensembl Gene ID:
ENSAPLG00000013450
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038453
51858284 - 51927163
68880
ENSAPLT00000023984
51858284 - 51927163
68880
ENSAPLT00000014053
51857878 - 51927163
69286