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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_51928219_51933412_F

Intron Information:

Intron Rank:
125141
Intron Class:
major
Intron Phase:
Intron Coordinates:
51928219 - 51933412
Intron Length:
5194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTATTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
81.2
30.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
85.8
0.81
0.8
80
30.9
Minor 5ss
34.7
-1.7
3.3
50.4
46
Minor BPS
65.8
0.57
1.6
83.94
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017396
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026500
51927523 - 51934140
6618