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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_51935561_51937199_F

Intron Information:

Intron Rank:
130326
Intron Class:
major
Intron Phase:
Intron Coordinates:
51935561 - 51937199
Intron Length:
1639

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAATTG
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
ATGGCTTTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
74.9
36.1
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
86.1
0.81
0.8
84.1
30.8
Minor 5ss
40.9
-1
3.2
55.7
48.5
Minor BPS
60.9
0.34
1.5
66.61
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020108
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023013
51935388 - 51938145
2758