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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_51960887_51974976_R

Intron Information:

Intron Rank:
132179
Intron Class:
major
Intron Phase:
Intron Coordinates:
51960887 - 51974976
Intron Length:
14090

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTAAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAC
U12 Branch Point Sequence:
CTTGTCTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
87
27.7
Major BPS
77.1
0.67
1
77.9
32.2
Major PPT
81.5
0.71
0.9
82.7
26.4
Minor 5ss
38.8
-1.3
3.4
55
43.6
Minor BPS
76.7
0.91
1.3
86.99
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018388
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034676
51956952 - 51975106
18155