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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_52071851_52072617_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52071851 - 52072617
Intron Length:
767

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCCC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAA
U12 Branch Point Sequence:
GGTTCATTATGA
Flanking Amino Acid:
KANGEDCLNQVCRRLGIIEV
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
66.5
39.1
Major BPS
75.5
0.63
1
66
40.9
Major PPT
89.5
0.89
0.6
87.9
22.1
Minor 5ss
26.6
-2.7
3.1
33.5
41.9
Minor BPS
47.7
-0.1
2.1
62.32
43.3

Associated Gene:

Gene:
MYLIP
Ensembl Gene ID:
ENSAPLG00000008040
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008362
52071764 - 52085841
14078