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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_52072809_52080910_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52072809 - 52080910
Intron Length:
8102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGTTA
5'SS Class:
strong_major
3'SS Sequence:
GATTCCATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TCTTGTATAACA
Flanking Amino Acid:
EPHLILQEQTRHMFFLHIKE
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
84.8
28.2
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
74.5
0.55
0.9
67
38.8
Minor 5ss
40.3
-1.1
3.3
55.3
48.9
Minor BPS
55.2
0.16
2
71.7
40.8

Associated Gene:

Gene:
MYLIP
Ensembl Gene ID:
ENSAPLG00000008040
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008362
52071764 - 52085841
14078