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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_52081097_52081532_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52081097 - 52081532
Intron Length:
436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATCAACA
Flanking Amino Acid:
AKELTTTILESIIAKHKQLE
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
74.1
36.4
Major BPS
100
1.24
0.5
100
0
Major PPT
78.9
0.65
0.9
74.8
33.8
Minor 5ss
32.2
-2
3
40.7
45.1
Minor BPS
70.6
0.64
1.8
85.44
33.4

Associated Gene:

Gene:
MYLIP
Ensembl Gene ID:
ENSAPLG00000008040
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008362
52071764 - 52085841
14078