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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_52082190_52083691_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52082190 - 52083691
Intron Length:
1502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TGCTGTTCTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
ATTAACTAACCC
Flanking Amino Acid:
RAITETHAFYRCDTVTSAVM
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
1.1
85.6
30.6
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
74.7
0.56
0.9
68.8
37.3
Minor 5ss
34.7
-1.7
2.6
44.5
42.8
Minor BPS
46.5
-0.2
2.1
62.52
42.6

Associated Gene:

Gene:
MYLIP
Ensembl Gene ID:
ENSAPLG00000008040
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008362
52071764 - 52085841
14078