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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_52084113_52084459_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52084113 - 52084459
Intron Length:
347

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
AACTTCCTAATA
Flanking Amino Acid:
CCKTCAAQLQSCPVCRSRVE
Intron Amino Acid Position:
417

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
86.5
28.6
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
92.2
0.95
0.6
84.9
29.9
Minor 5ss
39.5
-1.2
3.1
58.2
46
Minor BPS
55.5
0.17
1.6
63.15
37.2

Associated Gene:

Gene:
MYLIP
Ensembl Gene ID:
ENSAPLG00000008040
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008362
52071764 - 52085841
14078