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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_52100953_52106341_F

Intron Information:

Intron Rank:
131995
Intron Class:
major
Intron Phase:
Intron Coordinates:
52100953 - 52106341
Intron Length:
5389

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCACTGCTGGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCATCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
89.8
23.7
Major BPS
100
1.24
0.5
100
0
Major PPT
65.9
0.36
1.1
61.3
39.8
Minor 5ss
46.2
-0.4
2.8
67.4
43.6
Minor BPS
63.1
0.49
2
88.42
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020886
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023937
52100906 - 52107338
6433