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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_52106407_52107171_F

Intron Information:

Intron Rank:
131996
Intron Class:
major
Intron Phase:
Intron Coordinates:
52106407 - 52107171
Intron Length:
765

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATCAC
U12 Branch Point Sequence:
ACGACGTAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
71.1
37.5
Major BPS
61.7
0.29
1
63.7
32.3
Major PPT
88.7
0.87
0.6
84.7
22.9
Minor 5ss
37.8
-1.4
3
47.1
48.3
Minor BPS
43.9
-0.3
2.3
58.26
45.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020886
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023937
52100906 - 52107338
6433