Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_52121855_52126300_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

52121855 - 52126300

Intron Length:

4446

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGGGGGCT

5'SS Class:

major

3'SS Sequence:

CTTTCCATTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACTGAT

U12 Branch Point Sequence:

AATTACTGATAA

Flanking Amino Acid:

KRSSLKSRSEVDLTRTFTFR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.61

67.1

35.3

Major BPS

83.5

0.83

0.8

71.6

36.4

Major PPT

83.6

0.76

0.8

77.8

29.3

Minor 5ss

-2.9

3.6

47.1

Minor BPS

-0.3

1.9

58.97

39.6

Associated Gene:

Gene:

GMPR

Ensembl Gene ID:

ENSAPLG00000007973

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008280

52121768 - 52154046

32279