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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_52126421_52127118_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52126421 - 52127118
Intron Length:
698

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTGCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
GTTTTCTTATTT
Flanking Amino Acid:
TFEMAVVMAKHAMFTAIHKH
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
84.6
33.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
77.4
0.62
1
73.7
41.5
Minor 5ss
41.9
-0.9
3.1
59.6
38.8
Minor BPS
69.9
0.7
1.5
84.13
37

Associated Gene:

Gene:
GMPR
Ensembl Gene ID:
ENSAPLG00000007973
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008280
52121768 - 52154046
32279