About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_52135206_52137589_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52135206 - 52137589
Intron Length:
2384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTGTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCTAAC
U12 Branch Point Sequence:
GTTTTCTTGTCT
Flanking Amino Acid:
ADIIKVGIGPGSVCTTRIKT
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.1
1.06
0.7
83.2
30.8
Major BPS
54.3
0.11
1.2
57.5
37.5
Major PPT
82.7
0.74
0.8
77.4
36.9
Minor 5ss
33.5
-1.9
2.9
40.7
45.5
Minor BPS
48.8
-0
3.5
83.36
37.8

Associated Gene:

Gene:
GMPR
Ensembl Gene ID:
ENSAPLG00000007973
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008280
52121768 - 52154046
32279