About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_52137697_52143125_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52137697 - 52143125
Intron Length:
5429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TTTCTTCATGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
CTTTTCTTCATG
Flanking Amino Acid:
AHGLKGHIISDGGCSCPGDV
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.1
76.6
33.9
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
85.6
0.8
0.8
81.6
29.2
Minor 5ss
38
-1.4
2.8
52.2
44.4
Minor BPS
59.4
0.15
1.8
66.07
42.7

Associated Gene:

Gene:
GMPR
Ensembl Gene ID:
ENSAPLG00000007973
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008280
52121768 - 52154046
32279