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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_52147778_52152865_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52147778 - 52152865
Intron Length:
5088

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAACCAT
U12 Branch Point Sequence:
CTGCCCGTAACT
Flanking Amino Acid:
KKHAGGVAEYRASEGRTVEV
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
72.5
37.3
Major BPS
57.8
0.19
1.3
67.1
39.2
Major PPT
89
0.88
0.6
84.5
23.3
Minor 5ss
31.7
-2.1
3.6
47.8
47.9
Minor BPS
58.8
0.36
2.1
77.11
45.3

Associated Gene:

Gene:
GMPR
Ensembl Gene ID:
ENSAPLG00000007973
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008280
52121768 - 52154046
32279