About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_52171895_52230750_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
52171895 - 52230750
Intron Length:
58856

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTGAGTTTA
5'SS Class:
major
3'SS Sequence:
CCTCTCGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCCCAC
U12 Branch Point Sequence:
CCTCGCCCACCC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1
74.9
30.5
Major BPS
44
-0.3
1.2
47.5
37.7
Major PPT
78.3
0.64
0.8
72
32.5
Minor 5ss
40.9
-1
3
55
43.6
Minor BPS
36.1
-1
2.2
44.49
43.6

Associated Gene:

Gene:
ATXN1
Ensembl Gene ID:
ENSAPLG00000029862
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036160
52164998 - 52277777
112780
ENSAPLT00000046138
52164998 - 52342881
177884
ENSAPLT00000045487
52164998 - 52256243
91246