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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_52230875_52277637_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
52230875 - 52277637
Intron Length:
46763

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTATCTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
TTTTGCTTATCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1
72.2
39.5
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
88.8
0.87
0.7
83.9
30.8
Minor 5ss
30.4
-2.2
3.2
31.9
42.5
Minor BPS
69.8
0.7
2
91.83
37.8

Associated Gene:

Gene:
ATXN1
Ensembl Gene ID:
ENSAPLG00000029862
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036160
52164998 - 52277777
112780