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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_52230875_52342745_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
52230875 - 52342745
Intron Length:
111871

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTATCTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
TTTTGCTTATCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
82.1
24.6
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
88.8
0.87
0.7
83.9
30.8
Minor 5ss
27.3
-2.6
2.7
30.6
42.8
Minor BPS
69.8
0.7
2
91.83
37.8

Associated Gene:

Gene:
ATXN1
Ensembl Gene ID:
ENSAPLG00000029862
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046138
52164998 - 52342881
177884