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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_52494239_52494730_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52494239 - 52494730
Intron Length:
492

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTGCC
5'SS Class:
major
3'SS Sequence:
CACCCTTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCGTAAC
U12 Branch Point Sequence:
GTGACCGTAACC
Flanking Amino Acid:
QTGKSRGYGFVTMADRAAAE
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.6
1.1
69.3
36.6
Major BPS
49.8
-0
1.2
52.9
39.1
Major PPT
69.8
0.45
0.8
60.9
34.8
Minor 5ss
36.5
-1.5
3.2
51
39.8
Minor BPS
55.6
0.16
2.1
67.94
43.3

Associated Gene:

Gene:
RBM24
Ensembl Gene ID:
ENSAPLG00000007828
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008135
52494071 - 52502661
8591