About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_52543290_52546865_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52543290 - 52546865
Intron Length:
3576

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAG
U12 Branch Point Sequence:
AGCCCATTATAA
Flanking Amino Acid:
ECDAINGVNGSIAPYVEAFD
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
0.9
75.5
40.6
Major BPS
72.4
0.56
1.5
71.4
45.1
Major PPT
86.3
0.82
0.7
81.2
23.9
Minor 5ss
39.5
-1.2
3
50.7
39.9
Minor BPS
44
-0.4
1.9
50.98
39.6

Associated Gene:

Gene:
CAP2
Ensembl Gene ID:
ENSAPLG00000007343
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007649
52543165 - 52594771
51607