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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_52546967_52561916_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52546967 - 52561916
Intron Length:
14950

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
CTTTCCTTACAG
Flanking Amino Acid:
KILEGDVKTHAEMVRAAFQA
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
89
24.3
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
85.9
0.81
0.7
79.8
25.8
Minor 5ss
38.7
-1.3
3
56
41.5
Minor BPS
62
0.24
1.9
68.4
44.9

Associated Gene:

Gene:
CAP2
Ensembl Gene ID:
ENSAPLG00000007343
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007649
52543165 - 52594771
51607