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Intron Name: Anas_platyrhynchos_platyrhynchos_2_52561995_52574181_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

52561995 - 52574181

Intron Length:

12187

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGAAAA

5'SS Class:

strong_major

3'SS Sequence:

TTCTTTTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTCCAT

U12 Branch Point Sequence:

TCTTTTTCCATT

Flanking Amino Acid:

LASQCQEPQENEVAMLLKPI

Intron Amino Acid Position:

102

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.9

1.01

0.7

23.7

Major BPS

77.3

0.68

1.2

86.7

32.3

Major PPT

95.9

1.03

0.5

95.6

15.1

Minor 5ss

32.8

-2

2.9

39.7

45.8

Minor BPS

48.8

-0

1.9

70.72

41.5

Associated Gene:

Gene:

CAP2

Ensembl Gene ID:

ENSAPLG00000007343

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007649

52543165 - 52594771

51607