Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_52576481_52587092_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

52576481 - 52587092

Intron Length:

10612

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACT|GTAAGTACT

5'SS Class:

major

3'SS Sequence:

CCGTCTGACACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTAAAA

U12 Branch Point Sequence:

AGCTGATTAAAA

Flanking Amino Acid:

HTTGLTWSKTGPVASHMSLR

Intron Amino Acid Position:

214

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.8

0.63

1.1

77.8

36.6

Major BPS

64.3

0.36

71.3

30.3

Major PPT

62.6

0.28

56.4

37.9

Minor 5ss

41.3

-1

2.8

62.9

Minor BPS

46.5

-0.2

2.1

57.16

41.6

Associated Gene:

Gene:

CAP2

Ensembl Gene ID:

ENSAPLG00000007343

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007649

52543165 - 52594771

51607