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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_52588311_52589542_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52588311 - 52589542
Intron Length:
1232

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTGAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTCTTTTGAAAC
Flanking Amino Acid:
LELEGKKWRVEYQEDKNDLV
Intron Amino Acid Position:
336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
73.7
31.1
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
72.9
0.51
1
69.8
39.6
Minor 5ss
36.2
-1.6
2.8
41.9
38.9
Minor BPS
57.7
0.22
1.5
67.73
37.9

Associated Gene:

Gene:
CAP2
Ensembl Gene ID:
ENSAPLG00000007343
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007649
52543165 - 52594771
51607