About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_52589965_52593012_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52589965 - 52593012
Intron Length:
3048

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATACC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTGATAATAACT
Flanking Amino Acid:
VINSRDIQIQVMGKVPTISI
Intron Amino Acid Position:
405

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
81.2
30.6
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
89.3
0.88
0.6
84.8
22.8
Minor 5ss
36.4
-1.5
2.8
46.5
41.8
Minor BPS
50.7
0.1
1.9
74.76
41.5

Associated Gene:

Gene:
CAP2
Ensembl Gene ID:
ENSAPLG00000007343
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007649
52543165 - 52594771
51607